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BioNSi Requirements

 

BioNSi is a Cytoscape 3.2 plugin, but should work with other versions, such as 3.4 as well.

If you don't already have Cytoscape installed on your computer, you can get it here.

Also, make sure you have an updated Java installed here.

 

Install BioNSi

 

Open Cytoscape and install BioNSi:

  • In Cytoscape menu bar: Apps > App manager

  • Go to the "Currently Installed" tab. Make sure a previous version of BioNSI is not installed. If an older version is installed:

    • Choose the old BioNSi version and click Uninstall

    • Re-open Cytoscape. Go to the App Manager again.

  • Under "Install Apps" tab, click Install from File, and choose the .jar file downloaded from this website.

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Start constructing your model!

 

Need help? Take a look at our user guide, or simply open one of our network examples and start exploring them.

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Start Using BioNSi

 

With BioNSi you can: create a clear graphic represntaion of your biological network, run simulations over discrete-time and analyze your network behavior.

You can learn all you need to know about using BioNSi in this user guide:

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